As others have said, basically look for mods that are compatible with Bon Voyage, or aren't EP specific. Pescado's BV mods are fine, most of TwoJeffs are (though if you want to use ACR, you'll need to use ACR 1 rather than ACR 2), criquette's fixes (Better Nightlife, terrain replacement, etc) are fine as they were created for the Mac, and a lot of Chris Hatch's standalone stuff is BV-compatible - though the expansion-pack type stuff isn't as it requires all EPs.
Lazy Duchess's stuff is mostly designed to work on the Windows executables though, so although a few things may work the majority won't. Can't say for certain which, as I'm currently on a Sims 2 holiday due to work getting in the way of setting up my game again on a new iMac, so I've not tried any of them as yet.
You'll also need to watch out for CC objects, as some stuff will just not work, no matter if it was cloned from a base game object or not. Sometimes it's just that the wrong flags are set - I've been able to drag a few files into Windows and edit them in
SimPE - but others are beyond what I've been able to figure out. Lighting related stuff can be a bit iffy in particular. I'd advise putting any downloads into a testing folder until you've checked in game that they (a) show up at all, (b) don't crash the game when you browse to their bit of the catalogue, and (c) actually work as they're supposed to if they're anything more than deco.
The worst issue with the current 64-bit version of the Sims 2 Super Collection is that Aspyr seem to have accidentally broken "boolProp dontMergeNHFlora false" when doing the conversion from the 32-bit game. It's been reported many times, but alas there's still no fix. So while you can do all the other steps to make the hood visible at great distances, you won't be able to make your trees show up as they'll just flash blue or go invisible if you try it. But on the plus side, the game doesn't require you to do a lot of hair-tearing to get it to run at the resolution of a modern monitor, and it does run pretty smoothly. I miss some of the content from the missing EPs and SPs, but mainly get by without missing the functionality too much. (Though I've added in the 4-Key locking system from Simlogical to give me the ability to have pseudo-apartments.)